Bioconductor Merge data frames

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deseq2 deseq merge data frames cbind s4vectors

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by kirannbishwa01 ▴ 20

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merge merge data frames

updated 7.5 years ago by Haiying.Kong ▴ 110 • written 7.5 years ago by shadhiksk • 0

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bioconductor merge data frames combine biocgenerics

9.2 years ago • updated 14 months ago Konstantinos Yeles ▴ 80

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

They provide the code they used for DGE analysis in a gitlab link that can be found in the paper. In there you can find: ```` # estimate d…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

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scater/scran with TPMs from Salmon - counts?

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